Popular Packages
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PHP
omnilab/cactus
Omnilab Cactus: the NCI/CADD Chemical Identifier Resolver - a structure from a name, a CAS number, an InChIKey, an InChI or a SMILES, and its standard InChIKey, InChI, SMILES, IUPAC name, formula, molecular weight, CAS numbers, names and picture; OPSIN for a name it cannot read; no key.
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PHP
omnilab/cod
Omnilab COD: a crystal structure of the Crystallography Open Database by its COD id (9008565) - its names, formula, unit cell with uncertainties, space group, Z, temperature, radiation, R factors, publication and DOI - the entry it duplicates as a related thing, its CIF as a file; a search of the en
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PHP
omnilab/rhea
Omnilab Rhea: a biochemical reaction by any of its four Rhea ids (18157, 18160) or its KEGG reaction (R00200) - its equation, status, balance, transport, sides and their participants, citations - its quartet and KEGG reaction as identifiers, its ChEBI participants, EC numbers, GO term, Reactome even
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PHP
omnilab/kegg
Omnilab KEGG: a compound (C07481), a drug (D00528), a reaction (R00200), a pathway map (map00010, hsa00010) or an enzyme (2.7.1.40) by its KEGG identifier - names, formula and masses, a reaction's equation, a pathway's class and description, an enzyme's class and systematic name - the same thing in
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PHP
omnilab/gwas
Omnilab GWAS Catalog: a study by its accession (GCST000854), a variant by its rs id, a trait by its EFO, Mondo or HPO id - reported and mapped traits, samples, ancestries, platforms, functional class, location, mapped genes, studies - each with its strongest associations and the studies, variants an
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PHP
omnilab/clinvar
Omnilab ClinVar: a variation by its VariationID or VCV accession - its name, type, germline classification, review status, conditions, genes, protein change, consequence, location, SPDI, allele frequencies, aliases - its dbSNP id as a cross-reference, its genes and conditions (Mondo, OMIM, Orphanet,
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PHP
omnilab/opentargets
Omnilab Open Targets: a target by its Ensembl gene, a disease or phenotype by its EFO, Mondo, HPO or Orphanet id, a drug by its ChEMBL id - names, descriptions, locations, classes, therapeutic areas, parents, mechanisms of action, indications - their associations with scores, drugs and clinical cand
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PHP
omnilab/hgnc
Omnilab HGNC: a human gene by its HGNC id (HGNC:4827), approved, previous or alias symbol, or an id HGNC records (NCBI Gene, Ensembl, UniProt, OMIM) - its approved name, locus group and type, location, previous symbols and names, aliases, gene groups, status, dates, MANE Select, RefSeq and CCDS ids
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PHP
omnilab/quickgo
Omnilab QuickGO: a Gene Ontology term (GO:0005829) - its name, definition, aspect, synonyms, comment, obsolescence, direct parents by relation and children - a UniProt protein with the GO terms it is annotated to by aspect and evidence, its annotations with their evidence, reference and curator, and
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PHP
omnilab/interpro
Omnilab InterPro: an InterPro entry (IPR000971) or a Pfam family (PF00042) - its name, type, description, member signatures, GO terms, protein and structure counts, Pfam clan, representative structure, overlapping entries and hierarchy - a UniProt protein with the InterPro entries and Pfam families
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PHP
omnilab/string
Omnilab STRING: a protein by its STRING id (9606.ENSP00000269305), UniProt accession, Ensembl protein or name - its preferred name, protein name, annotation, species and Ensembl protein - its interaction partners as related things with their combined scores, the network among proteins with each evid
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PHP
systopic/relay
Live updates for the systopic packages: what a page rendered from, what a request wrote, through a hub (Centrifugo) to the open browsers.
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PHP
omnilab/reactome
Omnilab Reactome: a pathway or a reaction by its stable identifier (R-HSA-70171) - its names, species, summary, compartments, GO biological process, Rhea reaction, inputs, outputs and catalysts, review status, release dates, DOI and diagram - its participants (UniProt proteins, ChEBI small molecules
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kiyoung/resourceable
基础资源组件